Journal: Journal of Biomedical Science
Article Title: The endoplasmic reticulum degradation-enhancing α-mannosidase-like protein 3 attenuates the unfolded protein response and has pro-survival and pro-viral roles in hepatoma cells and hepatocellular carcinoma patients
doi: 10.1186/s12929-024-01103-9
Figure Lengend Snippet: UPR pathways are downregulated in EDEM3-overexpressing HepaRG cells. A EDEM3 expression in HepaRG C and HepaRG EDEM3 cells was determined by western blot. Detection of α-tubulin was used as total protein loading control. B Expression of EDEM3 ( green ) and PDI ( red ) was determined in HepaRG C and HepaRG EDEM3 cells by incubation with corresponding antibodies followed by immunofluorescence microscopy. Images were analyzed with the AxioVision SE64 Rel. 4.9.1 Software. The cell nuclei were stained with DAPI ( blue ). The indicated scale bar is 50 µm. C Expression of UPR and ERAD markers in HepaRG C and HepaRG EDEM3 cells was investigated by western blot with corresponding antibodies. Detection of α-tubulin, β-actin or calnexin was used as internal controls for total protein loading. The asterisk indicates a non-specific reactivity of the p - eIF2α antibody. The bands corresponding to the proteins of interest were quantified from three independent experiments by using the ImageJ software and normalized to corresponding internal controls. Statistical analysis of the relative protein expression using the unpaired t-test is shown (* p < 0.05, ** p < 0.01)
Article Snippet: Primary antibodies used for western blot analyses include mouse anti-EDEM3 (E0409, Sigma-Aldrich, 1:500), rabbit anti-EDEM1 (E8406, Sigma-Aldrich, 1:1000), rabbit anti-EDEM2 (JD-32) (sc - 130460, Santa Cruz Biotechnology, 1:250), rabbit anti-HBsAg (NB100-62652, Novus Biologicals, Littleton, CO, USA, 1:1000), rabbit anti-phospho-IRE1 alpha (Ser724) (PA1 - 16927, Invitrogen, 1:1000), rabbit anti-IRE1α (14C10, Cell Signaling Technology, Danvers, MA, USA, 1:1000), mouse anti - ATF6 (70B1413.1, Novus Biologicals, 1:1000), anti-glucose-regulated protein 94 (GRP94; H-10, Santa Cruz Biotechnology, 1:500), rabbit anti - phospho - PERK-T980 (16F8, Cell Signaling Technology, 1:1000), rabbit anti-PERK (C33E10, Cell Signaling Technology, 1:1000), rabbit anti - phospho-alpha subunit of eukaryotic initiation factor 2, S51(p - eIF2α; 9721S, Cell Signaling Technology, 1:1000), rabbit anti-eIF2α (9722S, Cell Signaling Technology, 1:1000), mouse anti-binding immunoglobulin protein (GRP78/BiP; A-10; sc-376768, Santa Cruz Biotechnology, 1:200), rabbit anti-suppressor of Lin - 12 - like (Sel1L; ab78298, Cell Signaling Technology, 1:500), rabbit anti-HMG-CoA reductase degradation protein 1, also known as Synoviolin (Hrd1; 14773, Cell Signaling Technology, 1:1000), rabbit anti-ER lectin 1 (XTP3-B/ERLEC1; ab181166, Abcam, Cambridge, UK, 1:500), rabbit anti-osteosarcoma amplified - 9 (OS-9; ab19853, Abcam, 1:500), rabbit anti-Ras homolog enriched in the brain (Rheb; E1G1R, Cell Signaling Technology, 1:1000), goat anti-apolipoprotein E (ApoE; AB947, Sigma-Aldrich, 1:5000), rabbit anti-microtubule-associated protein light chain 3A/B (LC3A/B; D3U4C, Cell Signaling Technology, 1:1000), rabbit anti-phospho-mammalian target of rapamycin (mTOR Ser2448; D9C2, Cell Signaling Technology, 1:1000), rabbit anti-mTOR (7C10, Cell Signaling Technology, 1:1000), mouse anti-p53 (DO-1, sc-126, Santa Cruz Biotechnology, 1:500), mouse anti-pro-apoptotic effector B-cell lymphoma protein 2 (Bcl-2) Associated X (BAX; MA5-14003, Invitrogen, 1:500), rabbit anti-calnexin (ab22595, Abcam, 1:5000), mouse anti - β - actin (ab8224, Abcam, 1:5000), rabbit anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH; PA1-987, Invitrogen, 1:5000), rabbit anti-α-tubulin (ab6046, Abcam, 1:10000).
Techniques: Expressing, Western Blot, Control, Incubation, Immunofluorescence, Microscopy, Software, Staining